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SRX955275: Sample CARBLKN0 Shotgun reads
1 ILLUMINA (Illumina HiSeq 1500) run: 3.7M spots, 1G bases, 657.8Mb downloads

Submitted by: McMaster University
Study: Mammuthus primigenius DNA repair Raw sequence reads
show Abstracthide Abstract
DNA damage in the form of abasic sites, chemically altered nucleotides, and strand fragmentation, is an important limitation in obtaining genetic information from many ancient and forensic samples. By incubating degraded DNA with specific enzyme combinations adopted from these pathways, it is possible to reverse some of the post-mortem nucleic damage prior to downstream analyses, such as library preparation, targeted enrichment and high-throughput sequencing. This study evaluates the performance of two available repair protocols, PreCR® Repair Mix and Nelson repair, on previously characterized DNA extracts from four mammoths.
Sample:
SAMN03381253 • SRS873359 • All experiments • All runs
Library:
Name: CARBLKN0
Instrument: Illumina HiSeq 1500
Strategy: OTHER
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward141  reverse

Runs: 1 run, 3.7M spots, 1G bases, 657.8Mb
Run# of Spots# of BasesSizePublished
SRR19138993,700,3131G657.8Mb2015-05-01

ID:
1356256

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